chore: Add autonomous agent infrastructure and cleanup old files

- Disable CLAUDE.md confirmation rules for autonomous agent operation
- Add utility scripts: check_linear_status.py, check_meta_issue.py, move_issues_to_todo.py
- Add works filter specification: prompts/app_spec_works_filter.txt
- Update .linear_project.json with works filter issues
- Remove old/stale scripts and documentation files
- Update search.html template

This commit completes the infrastructure for the autonomous agent that
successfully implemented all 13 works filter issues (LRP-136 to LRP-148).

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

.claude/settings.local.json

@@ -8,9 +8,7 @@
       "Bash(ls:*)",
       "Bash(git:*)",
       "Bash(rm:*)",
-      "Bash(python autonomous_agent_demo.py:*)",
       "Bash(python:*)",
-      "Bash(docker logs:*)",
       "Bash(curl:*)",
       "Bash(timeout 30 tail:*)",
       "Bash(xargs:*)",
@@ -20,10 +18,6 @@
       "WebFetch(domain:docs.anthropic.com)",
       "WebFetch(domain:docs.claude.com)",
       "Bash(npm start)",
-      "Bash(node test_extended_thinking.js:*)",
-      "Bash(node test_screenshot.js:*)",
-      "Bash(node test_thinking_badge.js:*)",
-      "Bash(node test_thinking_badge_simple.js:*)",
       "Bash(node:*)",
       "Bash(npx sqlite3:*)",
       "Bash(taskkill:*)",
@@ -34,8 +28,6 @@
       "Bash(iconv:*)",
       "Bash(pip install:*)",
       "Bash(sqlite3:*)",
-      "Bash(wmic process where \"name=''python.exe''\" get ProcessId,CommandLine /format:list)",
-      "Bash(powershell -Command \"Get-Process python | Select-Object Id, Path, StartTime | Format-List\")",
       "Bash(powershell:*)",
       "Bash(timeout 5 tail:*)",
       "Bash(timeout 8 tail:*)",
@@ -47,33 +39,22 @@
       "Bash(npm run dev)",
       "Bash(pkill:*)",
       "Bash(claude doctor:*)",
-      "Bash(dir /s /b \".claude_settings.json\")",
-      "Bash(dir /s /b \"settings.local.json\")",
       "Bash(python -m json.tool:*)",
       "Bash(del NUL)",
       "Bash(lsof:*)",
       "Bash(dir:*)",
       "Bash(docker ps:*)",
-      "Bash(wmic process where \"name=''node.exe'' OR name=''python.exe''\" get ProcessId,CommandLine /format:list)",
-      "Bash(cmd /c \"cd C:\\\\GitHub\\\\Linear_coding_ikario_body\\\\generations\\\\ikario_body && restart.bat\")",
-      "Bash(cmd /c \"C:\\\\GitHub\\\\linear_coding_library_rag\\\\generations\\\\library_rag\\\\diagnose_wsl.bat\")",
-      "Bash(wsl --status:*)",
-      "Bash(wsl --list:*)",
-      "Bash(docker version:*)",
-      "Bash(docker info:*)",
-      "Bash(docker stats:*)",
+      "Bash(wsl:*)",
+      "Bash(docker:*)",
       "Bash(timeout:*)",
-      "Bash(docker inspect:*)",
       "Bash(mypy:*)",
       "Bash(wc:*)",
       "Bash(exit 0)",
-      "Bash(docker stop:*)",
-      "Bash(docker rm:*)",
-      "Bash(docker run:*)",
-      "Bash(docker compose:*)",
       "Bash(cleanup_unused_files.bat)",
-      "Bash(cmd /c cleanup_unused_files.bat)",
-      "Bash(pytest:*)"
+      "Bash(pytest:*)",
+      "Bash(start test_sans_beige.html)",
+      "Bash(ollama list:*)",
+      "Bash(done)"
     ]
   }
 }