Add Library RAG project and cleanup root directory

- Add complete Library RAG application (Flask + MCP server)
  - PDF processing pipeline with OCR and LLM extraction
  - Weaviate vector database integration (BGE-M3 embeddings)
  - Flask web interface with search and document management
  - MCP server for Claude Desktop integration
  - Comprehensive test suite (134 tests)

- Clean up root directory
  - Remove obsolete documentation files
  - Remove backup and temporary files
  - Update autonomous agent configuration

- Update prompts
  - Enhance initializer bis prompt with better instructions

🤖 Generated with [Claude Code](https://claude.com/claude-code)

Co-Authored-By: Claude Sonnet 4.5 <noreply@anthropic.com>

generations/library_rag/requirements.txt

@@ -0,0 +1,27 @@
+# Core dependencies
+weaviate-client>=4.18.0
+flask>=3.0.0
+mistralai>=1.0.0
+python-dotenv>=1.0.0
+requests>=2.31.0
+werkzeug>=3.0.0
+
+# MCP Server dependencies
+mcp>=1.0.0
+pydantic>=2.0.0
+
+# Type checking and static analysis
+mypy>=1.8.0
+types-Flask>=1.1.0
+types-requests>=2.31.0
+
+# Documentation validation
+pydocstyle>=6.3.0
+
+# Testing dependencies
+pytest>=7.0.0
+pytest-asyncio>=0.23.0
+httpx>=0.25.0
+
+# MCP Client (for Python agent applications)
+anthropic>=0.39.0  # Claude API